PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010480-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 428aa    MW: 48982.9 Da    PI: 4.6796
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010480-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.81.5e-12168230168
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 
                            ++Yn YAke+GF +r+++s k+++++e   + ++C++eg+++ ++       ++r+etrtgC a+++ 
  SMil_00010480-RA_Salv 168 NYYNCYAKELGFGIRVKSSWKKRNSKEKRGAVLCCNCEGFKTMKEAC-----TRRKETRTGCLAMIRD 230
                            69****************************************98776.....8999*********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-10168232IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MADAAVFSPA GDGLSSNSGI EITVDETSEN SEELLDEGVE GFKIEAPDLR TEDSKILKLK  60
SNDLENAIQQ VLGIGRADLE NDGKQVLGIH NVDLQDESEN VLEFERNGHE SNREKMLEIR  120
SNDRDSSSDQ MLGITGNEAG AQNDHTLGKS YLPPVEGMEF ESYDDAYNYY NCYAKELGFG  180
IRVKSSWKKR NSKEKRGAVL CCNCEGFKTM KEACTRRKET RTGCLAMIRD HEWLNSLYEE  240
RERWAPVYLK NSIFAGIFTY QPGEYANPFF HGYLDDQMTW TEFFKVYELL QQKMIQREAL  300
DDVESREFRP VLRTRCSYET QVSELYTKEI FLKFQEEVAL MPGCFSVTRV HVNGPIITCM  360
VKERDDGGDA REARNFEVVY DKIGMEHLYR RAMQVVAEGM ASQDHHMVAW QAFKESLNKV  420
RLAAEKPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073396.11e-101PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X1
SwissprotQ9SSQ41e-41FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A022Q5792e-69A0A022Q579_ERYGU; Uncharacterized protein
STRINGSolyc06g068210.1.14e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.17e-43FAR1-related sequence 6